STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LENED_009727Phosphoglycerate mutase-like protein; Belongs to the histidine acid phosphatase family. (354 aa)    
Predicted Functional Partners:
LENED_006753
Nudix hydrolase 20.
    
 0.578
LENED_004837
Thiamin biosynthesis protein (Thi-4).
     
 0.530
LENED_005493
Magnesium-like protein.
     
 0.520
LENED_000909
Cyclin-dependent protein kinase inhibitor.
   
 
 0.502
LENED_009094
Nucleus protein.
     
 0.434
LENED_012243
Thiamine pyrophosphokinase.
     
 0.434
Your Current Organism:
Lentinula edodes
NCBI taxonomy Id: 5353
Other names: L. edodes, Lentinus edodes, shiitake mushroom
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.