A0A5C3NIY1 protein (Heliocybe sulcata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A5C3NIY1

RNA-binding domain-containing protein. (197 aa)

Predicted Functional Partners:

A0A5C3NMT8

0.991

A0A5C3MXX0

0.988

A0A5C3N301

0.988

A0A5C3MRG2

0.983

A0A5C3NF60

0.978

A0A5C3NK04

0.978

A0A5C3NB23

0.976

A0A5C3MPV9

0.975

A0A5C3N9D8

0.970

A0A5C3NCI8

0.968

Your Current Organism:

Heliocybe sulcata

NCBI taxonomy Id: 5364
Other names: H. sulcata, Lentinus sulcatus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A5C3MPV9	A0A5C3MXX0	Uncharacterized protein.	PWI domain-containing protein.	0.732
A0A5C3MPV9	A0A5C3N9D8	Uncharacterized protein.	Smg4_UPF3 domain-containing protein.	0.725
A0A5C3MPV9	A0A5C3NF60	Uncharacterized protein.	DEAD-domain-containing protein; Belongs to the DEAD box helicase family.	0.899
A0A5C3MPV9	A0A5C3NIY1	Uncharacterized protein.	RNA-binding domain-containing protein.	0.975
A0A5C3MRG2	A0A5C3MXX0	P-loop containing nucleoside triphosphate hydrolase protein.	PWI domain-containing protein.	0.910
A0A5C3MRG2	A0A5C3N301	P-loop containing nucleoside triphosphate hydrolase protein.	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.	0.987
A0A5C3MRG2	A0A5C3N9D8	P-loop containing nucleoside triphosphate hydrolase protein.	Smg4_UPF3 domain-containing protein.	0.715
A0A5C3MRG2	A0A5C3NCI8	P-loop containing nucleoside triphosphate hydrolase protein.	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's.	0.766
A0A5C3MRG2	A0A5C3NF60	P-loop containing nucleoside triphosphate hydrolase protein.	DEAD-domain-containing protein; Belongs to the DEAD box helicase family.	0.871
A0A5C3MRG2	A0A5C3NIY1	P-loop containing nucleoside triphosphate hydrolase protein.	RNA-binding domain-containing protein.	0.983
A0A5C3MRG2	A0A5C3NMT8	P-loop containing nucleoside triphosphate hydrolase protein.	Nuclear cap-binding protein subunit 2.	0.934
A0A5C3MXX0	A0A5C3MPV9	PWI domain-containing protein.	Uncharacterized protein.	0.732
A0A5C3MXX0	A0A5C3MRG2	PWI domain-containing protein.	P-loop containing nucleoside triphosphate hydrolase protein.	0.910
A0A5C3MXX0	A0A5C3N301	PWI domain-containing protein.	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.	0.802
A0A5C3MXX0	A0A5C3N9D8	PWI domain-containing protein.	Smg4_UPF3 domain-containing protein.	0.997
A0A5C3MXX0	A0A5C3NB23	PWI domain-containing protein.	RanBD1 domain-containing protein.	0.977
A0A5C3MXX0	A0A5C3NF60	PWI domain-containing protein.	DEAD-domain-containing protein; Belongs to the DEAD box helicase family.	0.883
A0A5C3MXX0	A0A5C3NIY1	PWI domain-containing protein.	RNA-binding domain-containing protein.	0.988
A0A5C3MXX0	A0A5C3NK04	PWI domain-containing protein.	Transcription factor.	0.962
A0A5C3MXX0	A0A5C3NMT8	PWI domain-containing protein.	Nuclear cap-binding protein subunit 2.	0.860