STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFD45569.1Uncharacterized conserved protein YbbC, DUF1343 family. (411 aa)    
Predicted Functional Partners:
SFD76141.1
CubicO group peptidase, beta-lactamase class C family.
    0.978
SFF00599.1
beta-N-acetylhexosaminidase.
 
 0.962
SFF43479.1
CubicO group peptidase, beta-lactamase class C family.
    0.714
SFF24635.1
CubicO group peptidase, beta-lactamase class C family.
 
    0.629
SFE20319.1
Muramoyltetrapeptide carboxypeptidase.
  
     0.563
nadD
Nicotinate (nicotinamide) nucleotide adenylyltransferase; Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD).
       0.557
SFF22527.1
CubicO group peptidase, beta-lactamase class C family.
 
    0.538
SFD45553.1
Hypothetical protein.
       0.528
SFD76852.1
CubicO group peptidase, beta-lactamase class C family.
 
    0.496
ddpX
D-alanyl-D-alanine dipeptidase; Catalyzes hydrolysis of the D-alanyl-D-alanine dipeptide.
     0.469
Your Current Organism:
Nannocystis exedens
NCBI taxonomy Id: 54
Other names: ATCC 25963, DSM 71, N. exedens
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.