Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| SFD75740.1 | SFD75755.1 | SAMN02745121_01402 | SAMN02745121_01403 | Protein of unknown function. | Hypothetical protein. | 0.571 |
| SFD75740.1 | SFD99185.1 | SAMN02745121_01402 | SAMN02745121_02563 | Protein of unknown function. | DNA polymerase-3 subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of re [...] | 0.460 |
| SFD75740.1 | SFD99826.1 | SAMN02745121_01402 | SAMN02745121_02597 | Protein of unknown function. | ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains). | 0.608 |
| SFD75740.1 | SFE06896.1 | SAMN02745121_01402 | SAMN02745121_02871 | Protein of unknown function. | ATP-dependent DNA helicase, RecQ family/DNA topoisomerase III. | 0.844 |
| SFD75740.1 | SFE12485.1 | SAMN02745121_01402 | SAMN02745121_03064 | Protein of unknown function. | Tetratricopeptide repeat-containing protein. | 0.460 |
| SFD75740.1 | SFE18930.1 | SAMN02745121_01402 | SAMN02745121_03306 | Protein of unknown function. | DNA helicase-2 / ATP-dependent DNA helicase PcrA. | 0.608 |
| SFD75740.1 | SFE67992.1 | SAMN02745121_01402 | SAMN02745121_05156 | Protein of unknown function. | Serine/threonine protein kinase. | 0.460 |
| SFD75740.1 | SFF28908.1 | SAMN02745121_01402 | SAMN02745121_07966 | Protein of unknown function. | DNA helicase-2 / ATP-dependent DNA helicase PcrA. | 0.608 |
| SFD75740.1 | topA | SAMN02745121_01402 | SAMN02745121_07924 | Protein of unknown function. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.489 |
| SFD75740.1 | truB | SAMN02745121_01402 | SAMN02745121_02115 | Protein of unknown function. | tRNA pseudouridine synthase B; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily. | 0.558 |
| SFD75755.1 | SFD75740.1 | SAMN02745121_01403 | SAMN02745121_01402 | Hypothetical protein. | Protein of unknown function. | 0.571 |
| SFD99185.1 | SFD75740.1 | SAMN02745121_02563 | SAMN02745121_01402 | DNA polymerase-3 subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of re [...] | Protein of unknown function. | 0.460 |
| SFD99185.1 | SFE06896.1 | SAMN02745121_02563 | SAMN02745121_02871 | DNA polymerase-3 subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of re [...] | ATP-dependent DNA helicase, RecQ family/DNA topoisomerase III. | 0.906 |
| SFD99185.1 | topA | SAMN02745121_02563 | SAMN02745121_07924 | DNA polymerase-3 subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of re [...] | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.567 |
| SFD99826.1 | SFD75740.1 | SAMN02745121_02597 | SAMN02745121_01402 | ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains). | Protein of unknown function. | 0.608 |
| SFD99826.1 | SFE06896.1 | SAMN02745121_02597 | SAMN02745121_02871 | ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains). | ATP-dependent DNA helicase, RecQ family/DNA topoisomerase III. | 0.426 |
| SFE06896.1 | SFD75740.1 | SAMN02745121_02871 | SAMN02745121_01402 | ATP-dependent DNA helicase, RecQ family/DNA topoisomerase III. | Protein of unknown function. | 0.844 |
| SFE06896.1 | SFD99185.1 | SAMN02745121_02871 | SAMN02745121_02563 | ATP-dependent DNA helicase, RecQ family/DNA topoisomerase III. | DNA polymerase-3 subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of re [...] | 0.906 |
| SFE06896.1 | SFD99826.1 | SAMN02745121_02871 | SAMN02745121_02597 | ATP-dependent DNA helicase, RecQ family/DNA topoisomerase III. | ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains). | 0.426 |
| SFE06896.1 | SFE12485.1 | SAMN02745121_02871 | SAMN02745121_03064 | ATP-dependent DNA helicase, RecQ family/DNA topoisomerase III. | Tetratricopeptide repeat-containing protein. | 0.997 |
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