STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFD82827.1Transglycosylase SLT domain-containing protein. (156 aa)    
Predicted Functional Partners:
SFF26777.1
Outer membrane protein OmpA.
  
     0.528
SFD77383.1
Chemotaxis protein MotB.
 
    0.507
SFD53800.1
Two-component system, chemotaxis family, sensor kinase CheA.
 
    0.501
SFE81921.1
Rod shape-determining protein MreC; Involved in formation and maintenance of cell shape.
 
   
 0.419
SFF15889.1
Type III secretion protein R.
 
  
 0.407
SFD51926.1
Outer membrane protein OmpA.
  
     0.406
SFD82841.1
MYXO-CTERM domain-containing protein.
       0.400
Your Current Organism:
Nannocystis exedens
NCBI taxonomy Id: 54
Other names: ATCC 25963, DSM 71, N. exedens
Server load: low (26%) [HD]