Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| SFD93856.1 | truA | SAMN02745121_02313 | SAMN02745121_02314 | Short-chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. | tRNA pseudouridine38-40 synthase; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs. | 0.769 |
| SFE29898.1 | SFF00567.1 | SAMN02745121_03775 | SAMN02745121_06460 | Glyoxylase, beta-lactamase superfamily II. | Molybdopterin or thiamine biosynthesis adenylyltransferase. | 0.872 |
| SFE29898.1 | rplQ | SAMN02745121_03775 | SAMN02745121_07229 | Glyoxylase, beta-lactamase superfamily II. | LSU ribosomal protein L17P. | 0.443 |
| SFE29898.1 | rsmH | SAMN02745121_03775 | SAMN02745121_01916 | Glyoxylase, beta-lactamase superfamily II. | 16S rRNA (cytosine1402-N4)-methyltransferase; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA. | 0.905 |
| SFE29898.1 | truA | SAMN02745121_03775 | SAMN02745121_02314 | Glyoxylase, beta-lactamase superfamily II. | tRNA pseudouridine38-40 synthase; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs. | 0.921 |
| SFE29898.1 | ybeY | SAMN02745121_03775 | SAMN02745121_00331 | Glyoxylase, beta-lactamase superfamily II. | ssRNA-specific RNase YbeY, 16S rRNA maturation enzyme; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. | 0.969 |
| SFF00567.1 | SFE29898.1 | SAMN02745121_06460 | SAMN02745121_03775 | Molybdopterin or thiamine biosynthesis adenylyltransferase. | Glyoxylase, beta-lactamase superfamily II. | 0.872 |
| SFF00567.1 | rplQ | SAMN02745121_06460 | SAMN02745121_07229 | Molybdopterin or thiamine biosynthesis adenylyltransferase. | LSU ribosomal protein L17P. | 0.640 |
| SFF00567.1 | truA | SAMN02745121_06460 | SAMN02745121_02314 | Molybdopterin or thiamine biosynthesis adenylyltransferase. | tRNA pseudouridine38-40 synthase; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs. | 0.757 |
| SFF00567.1 | ybeY | SAMN02745121_06460 | SAMN02745121_00331 | Molybdopterin or thiamine biosynthesis adenylyltransferase. | ssRNA-specific RNase YbeY, 16S rRNA maturation enzyme; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. | 0.660 |
| SFF18399.1 | rplQ | SAMN02745121_07399 | SAMN02745121_07229 | RNA polymerase, alpha chain C terminal domain. | LSU ribosomal protein L17P. | 0.877 |
| SFF18399.1 | truA | SAMN02745121_07399 | SAMN02745121_02314 | RNA polymerase, alpha chain C terminal domain. | tRNA pseudouridine38-40 synthase; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs. | 0.749 |
| SFF18399.1 | truB | SAMN02745121_07399 | SAMN02745121_02115 | RNA polymerase, alpha chain C terminal domain. | tRNA pseudouridine synthase B; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily. | 0.627 |
| accD | truA | SAMN02745121_03714 | SAMN02745121_02314 | acetyl-CoA carboxylase carboxyltransferase subunit alpha; Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl-CoA; Belongs to the AccD/PCCB family. | tRNA pseudouridine38-40 synthase; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs. | 0.690 |
| rplQ | SFE29898.1 | SAMN02745121_07229 | SAMN02745121_03775 | LSU ribosomal protein L17P. | Glyoxylase, beta-lactamase superfamily II. | 0.443 |
| rplQ | SFF00567.1 | SAMN02745121_07229 | SAMN02745121_06460 | LSU ribosomal protein L17P. | Molybdopterin or thiamine biosynthesis adenylyltransferase. | 0.640 |
| rplQ | SFF18399.1 | SAMN02745121_07229 | SAMN02745121_07399 | LSU ribosomal protein L17P. | RNA polymerase, alpha chain C terminal domain. | 0.877 |
| rplQ | rpoA | SAMN02745121_07229 | SAMN02745121_07228 | LSU ribosomal protein L17P. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.983 |
| rplQ | truA | SAMN02745121_07229 | SAMN02745121_02314 | LSU ribosomal protein L17P. | tRNA pseudouridine38-40 synthase; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs. | 0.826 |
| rplQ | truB | SAMN02745121_07229 | SAMN02745121_02115 | LSU ribosomal protein L17P. | tRNA pseudouridine synthase B; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily. | 0.721 |
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