STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFE12485.1Tetratricopeptide repeat-containing protein. (4046 aa)    
Predicted Functional Partners:
SFE06896.1
ATP-dependent DNA helicase, RecQ family/DNA topoisomerase III.
  
 0.997
SFE60484.1
ATP-dependent DNA helicase RecQ.
  
 0.971
SFF05541.1
Hypothetical protein.
 
 0.951
SFE34243.1
Calcineurin-like phosphoesterase.
 
 0.945
SFE79026.1
Calcineurin-like phosphoesterase.
 
 0.944
SFD95361.1
Calcineurin-like phosphoesterase.
 
 0.935
SFE82634.1
Hypothetical protein.
 
 0.934
SFD77083.1
Hypothetical protein.
   
 0.932
SFF31518.1
HAMP domain-containing protein.
   
 0.932
SFF46358.1
Signal transduction histidine kinase.
   
 0.932
Your Current Organism:
Nannocystis exedens
NCBI taxonomy Id: 54
Other names: ATCC 25963, DSM 71, N. exedens
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.