STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFE16269.1Dihydroorotase. (369 aa)    
Predicted Functional Partners:
pyrB
Aspartate carbamoyltransferase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family.
 
 0.982
SFD86488.1
Dihydropyrimidine dehydrogenase (NAD+) subunit PreA.
  
 0.940
pyrD
Dihydroorotate oxidase B, catalytic subunit; Catalyzes the conversion of dihydroorotate to orotate.
  
 0.873
SFD55831.1
Dihydroorotate dehydrogenase electron transfer subunit.
  
 
 0.873
carA
Carbamoyl-phosphate synthase small subunit; Belongs to the CarA family.
  
 
 0.830
carA-2
Carbamoyl-phosphate synthase small subunit; Belongs to the CarA family.
  
 
 0.830
carB
Carbamoyl-phosphate synthase large subunit.
  
 0.791
SFE62448.1
ATP-grasp domain-containing protein.
  
 0.791
carB-2
Carbamoyl-phosphate synthase large subunit; Belongs to the CarB family.
  
 0.791
pyrE
Orotate phosphoribosyltransferase; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP).
  
 
 0.786
Your Current Organism:
Nannocystis exedens
NCBI taxonomy Id: 54
Other names: ATCC 25963, DSM 71, N. exedens
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