STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFE16331.1Ricin-type beta-trefoil lectin domain-like. (179 aa)    
Predicted Functional Partners:
SFF12870.1
Poly(3-hydroxybutyrate) depolymerase.
 
  
  0.890
SFF41060.1
Endo-1,4-beta-xylanase, GH35 family.
 
  
 0.796
SFF45993.1
Glycosyl hydrolases family 16.
 
  
 0.687
SFF22371.1
Phosphoinositide phospholipase C, Ca2+-dependent.
 
     0.683
SFD76957.1
Hypothetical protein.
     
 0.611
SFF00599.1
beta-N-acetylhexosaminidase.
    
 0.577
SFE30542.1
Peptidoglycan/xylan/chitin deacetylase, PgdA/CDA1 family.
     
 0.576
SFE43413.1
Polysaccharide deacetylase.
     
 0.576
SFE16346.1
TPR repeat-containing protein.
       0.561
SFE49393.1
Lysophospholipase L1.
 
  
 0.537
Your Current Organism:
Nannocystis exedens
NCBI taxonomy Id: 54
Other names: ATCC 25963, DSM 71, N. exedens
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