STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFE30542.1Peptidoglycan/xylan/chitin deacetylase, PgdA/CDA1 family. (324 aa)    
Predicted Functional Partners:
SFF43385.1
Lysophospholipase L1.
    
 0.833
SFD53233.1
Hyaluronan synthase.
  
 
 0.699
SFD73666.1
Ceramide glucosyltransferase.
  
 
 0.699
SFE01812.1
Glycosyltransferase, catalytic subunit of cellulose synthase and poly-beta-1,6-N-acetylglucosamine synthase.
  
 
 0.699
SFF40959.1
Glycosyl transferase family 2.
  
 
 0.699
SFE36364.1
Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase.
 
  
  0.695
SFD91332.1
Glutamate carboxypeptidase.
 
  
  0.599
SFF33778.1
Transketolase; Belongs to the transketolase family.
    
 0.580
SFD87620.1
PA14 domain-containing protein; Belongs to the glycosyl hydrolase 43 family.
     
 0.576
SFE16331.1
Ricin-type beta-trefoil lectin domain-like.
     
 0.576
Your Current Organism:
Nannocystis exedens
NCBI taxonomy Id: 54
Other names: ATCC 25963, DSM 71, N. exedens
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.