STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFE32537.1DNA recombination-mediator protein A. (332 aa)    
Predicted Functional Partners:
SFF26066.1
comF family protein.
 
 
 0.903
SFD86967.1
Magnesium chelatase family protein.
 
 
 0.845
SFE81565.1
Competence protein ComEC.
 
  
 0.766
SFF13831.1
Leader peptidase (prepilin peptidase) / N-methyltransferase.
  
  
 0.752
SFE08533.1
Competence protein.
 
  
 0.749
SFE01180.1
Single-strand binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism.
 
  
 0.651
SFE43641.1
DNA replication and repair protein RadC; Belongs to the UPF0758 family.
  
  
 0.643
SFF15889.1
Type III secretion protein R.
  
    0.643
SFD52256.1
Exonuclease RecJ.
 
   
 0.624
SFE21315.1
PAS domain S-box-containing protein.
 
    0.623
Your Current Organism:
Nannocystis exedens
NCBI taxonomy Id: 54
Other names: ATCC 25963, DSM 71, N. exedens
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