STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFE35895.1Castor and Pollux, part of voltage-gated ion channel. (615 aa)    
Predicted Functional Partners:
SFF00728.1
Nicotinamide-nucleotide amidase; Belongs to the CinA family.
    
 0.752
nadE
NAD+ synthase (glutamine-hydrolysing); Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
  
 
  0.704
SFF08763.1
Alpha/beta hydrolase family protein.
  
     0.677
SFE61708.1
16S rRNA (cytosine967-C5)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.
  
   0.660
SFD55213.1
Potassium uptake protein, TrkH family.
  
 0.622
SFF05725.1
Trk system potassium uptake protein TrkH.
  
 0.622
SFF05740.1
Trk system potassium uptake protein TrkH.
  
 0.622
SFF07084.1
Cation transport protein.
  
 0.622
SFE43181.1
Molybdopterin synthase subunit MoaE.
   
    0.601
SFD52923.1
Uroporphyrinogen III methyltransferase / synthase.
  
    0.572
Your Current Organism:
Nannocystis exedens
NCBI taxonomy Id: 54
Other names: ATCC 25963, DSM 71, N. exedens
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