STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFE36273.1Hypothetical protein. (88 aa)    
Predicted Functional Partners:
icmF
methylmalonyl-CoA mutase; Catalyzes the reversible interconversion of isobutyryl-CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly.
    
 0.824
SFE07641.1
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
     
 0.786
SFD65708.1
Heterodimeric methylmalonyl-CoA mutase small subunit.
    
 0.749
SFD65717.1
Heterodimeric methylmalonyl-CoA mutase large subunit precursor.
    
 0.749
SFF46063.1
MarR family protein.
  
     0.683
SFF42714.1
Transcriptional regulator, TetR family.
  
     0.608
SFE78669.1
4Fe-4S binding domain-containing protein; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.
  
 
 0.603
SFE29898.1
Glyoxylase, beta-lactamase superfamily II.
     
 0.574
SFE70463.1
3' terminal RNA ribose 2'-O-methyltransferase Hen1.
  
  
  0.533
SFD87375.1
Hypothetical protein.
 
     0.530
Your Current Organism:
Nannocystis exedens
NCBI taxonomy Id: 54
Other names: ATCC 25963, DSM 71, N. exedens
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