STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFE43392.1Glycosyltransferase involved in cell wall bisynthesis. (245 aa)    
Predicted Functional Partners:
SFE43413.1
Polysaccharide deacetylase.
 
 
 0.893
SFE43373.1
Protoporphyrinogen oxidase.
 
   
 0.854
SFD65775.1
Hypothetical protein.
 
 
 0.763
SFE16366.1
Trehalose 6-phosphate synthase /trehalose 6-phosphatase.
     
 0.742
SFE27609.1
Dolichol-phosphate mannosyltransferase.
  
     0.704
SFE49592.1
Glycosyl transferase family 2.
 
  
  0.693
SFE43347.1
Hypothetical protein.
 
     0.665
hisD
Histidinol dehydrogenase; Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine.
    
 0.646
fmt
methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family.
  
 
 0.594
SFF03075.1
Glycosyltransferase involved in cell wall bisynthesis.
 
  
  0.587
Your Current Organism:
Nannocystis exedens
NCBI taxonomy Id: 54
Other names: ATCC 25963, DSM 71, N. exedens
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.