STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFE53912.1Transcriptional regulator, XRE family with cupin sensor. (186 aa)    
Predicted Functional Partners:
SFF00728.1
Nicotinamide-nucleotide amidase; Belongs to the CinA family.
  
 
 0.812
SFF12789.1
4-aminobutyrate aminotransferase.
  
 0.792
nadE
NAD+ synthase (glutamine-hydrolysing); Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
  
 
 0.782
SFD82668.1
Catalase; Serves to protect cells from the toxic effects of hydrogen peroxide.
    
 0.768
SFF46749.1
Transcriptional regulator, GntR family.
 
  
 0.738
SFD65656.1
Transcriptional regulator, XRE family /PTS IIA-like nitrogen-regulatory protein PtsN.
   
 
 0.684
SFD84194.1
Hypothetical protein.
  
 
  0.655
SFD46842.1
Adenylosuccinate lyase; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.
   
 0.612
SFD57756.1
UDP-N-acetylmuramate: L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase.
   
  0.581
SFD94600.1
Acetyltransferase (GNAT) family protein.
  
 0.580
Your Current Organism:
Nannocystis exedens
NCBI taxonomy Id: 54
Other names: ATCC 25963, DSM 71, N. exedens
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.