STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFE63085.1Fur family transcriptional regulator, ferric uptake regulator; Belongs to the Fur family. (146 aa)    
Predicted Functional Partners:
dcd
dCTP deaminase; Catalyzes the deamination of dCTP to dUTP.
     
 0.562
SFE15907.1
Hypothetical protein.
  
    0.549
SFD83986.1
SWIM zinc finger.
  
    0.542
SFF32741.1
Hypothetical protein.
  
    0.542
SFD53972.1
Peroxiredoxin (alkyl hydroperoxide reductase subunit C); Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides.
  
  
 0.534
SFE08720.1
Peroxiredoxin (alkyl hydroperoxide reductase subunit C).
  
  
 0.534
SFD82668.1
Catalase; Serves to protect cells from the toxic effects of hydrogen peroxide.
   
 0.511
SFE06981.1
Superoxide dismutase, Fe-Mn family.
  
 
 0.484
SFE39224.1
Superoxide dismutase, Fe-Mn family; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
  
 
 0.484
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
   0.416
Your Current Organism:
Nannocystis exedens
NCBI taxonomy Id: 54
Other names: ATCC 25963, DSM 71, N. exedens
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