STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFE74001.115-cis-phytoene desaturase. (499 aa)    
Predicted Functional Partners:
SFD52742.1
Farnesyl-diphosphate farnesyltransferase.
  
 0.849
SFD52729.1
Squalene synthase HpnC.
  
 0.848
SFD79074.1
Phytoene synthase.
 
  
 0.743
SFE74032.1
Carbon monoxide dehydrogenase subunit G.
       0.559
SFE55144.1
Ketopantoate reductase.
  
     0.533
SFE66927.1
Peptidase family M48.
  
     0.496
SFE97505.1
All-trans-retinol 13,14-reductase.
 
  
 0.480
SFD52367.1
Dihydroflavonol-4-reductase.
  
  
  0.450
SFD85445.1
Cytochrome b6-f complex iron-sulfur subunit.
  
  
 0.445
Your Current Organism:
Nannocystis exedens
NCBI taxonomy Id: 54
Other names: ATCC 25963, DSM 71, N. exedens
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.