STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFE75897.1Poly(3-hydroxybutyrate) depolymerase. (360 aa)    
Predicted Functional Partners:
SFE75879.1
TIGR02452 family protein.
 
     0.603
SFD59021.1
Hypothetical protein.
  
     0.587
SFF41060.1
Endo-1,4-beta-xylanase, GH35 family.
 
 
   0.575
SFE73735.1
Lysophospholipase, alpha-beta hydrolase superfamily.
  
     0.537
SFE67517.1
Glycosyl hydrolase family 45.
  
     0.512
SFE34539.1
Cyclic nucleotide-binding domain-containing protein.
  
     0.498
SFE91687.1
Predicted dienelactone hydrolase.
  
     0.479
SFF44991.1
Pectate lyase.
  
     0.450
SFF12953.1
3',5'-cyclic AMP phosphodiesterase CpdA.
  
     0.429
Your Current Organism:
Nannocystis exedens
NCBI taxonomy Id: 54
Other names: ATCC 25963, DSM 71, N. exedens
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.