STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFE76081.1RNA polymerase sigma-70 factor, ECF subfamily. (207 aa)    
Predicted Functional Partners:
SFE76064.1
FecR family protein.
       0.773
SFE32947.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.643
SFE46225.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.599
SFD78541.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.595
SFE83028.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.581
SFF38234.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.573
SFD69811.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.557
SFF17601.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.551
SFF22591.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.539
SFD85276.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.536
Your Current Organism:
Nannocystis exedens
NCBI taxonomy Id: 54
Other names: ATCC 25963, DSM 71, N. exedens
Server load: low (32%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.