STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFE80948.1WD40 repeat. (1112 aa)    
Predicted Functional Partners:
SFE87618.1
WD40 repeat.
 
     0.775
SFE46261.1
Hypothetical protein.
 
     0.774
SFF37507.1
WD domain-containing protein, G-beta repeat-containing protein.
  
     0.774
SFD92740.1
WD40 repeat.
  
     0.768
SFF32679.1
Hypothetical protein.
  
     0.644
SFE80969.1
Methyltransferase domain-containing protein.
 
     0.614
SFE13740.1
Tetratricopeptide repeat-containing protein.
  
 
  0.585
SFD93631.1
Tetratricopeptide (TPR) repeat.
 
 
  0.560
SFF19523.1
Tetratricopeptide repeat-containing protein.
  
 
  0.548
SFF08545.1
Protein tyrosine kinase.
  
 
  0.512
Your Current Organism:
Nannocystis exedens
NCBI taxonomy Id: 54
Other names: ATCC 25963, DSM 71, N. exedens
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