TEA_007923 protein (Camellia sinensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

TEA_007923

GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family. (263 aa)

Predicted Functional Partners:

TEA_000249

0.987

TEA_023212

0.916

TEA_001912

0.916

TEA_013686

0.916

TEA_009575

0.916

TEA_027558

0.914

TEA_025916

0.900

TEA_020814

0.900

TEA_015487

0.900

TEA_002365

0.900

Your Current Organism:

Camellia sinensis

NCBI taxonomy Id: 542762
Other names: C. sinensis var. sinensis, Camellia sinensis var. sinensis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
TEA_000249	TEA_001912	A0A4S4DS30	A0A4S4D450	Exportin-T; tRNA nucleus export receptor which facilitates tRNA translocation across the nuclear pore complex. Belongs to the exportin family.	WPP domain-containing protein.	0.414
TEA_000249	TEA_002365	A0A4S4DS30	A0A4S4ETE0	Exportin-T; tRNA nucleus export receptor which facilitates tRNA translocation across the nuclear pore complex. Belongs to the exportin family.	RanBD1 domain-containing protein.	0.421
TEA_000249	TEA_007923	A0A4S4DS30	A0A4S4DLS9	Exportin-T; tRNA nucleus export receptor which facilitates tRNA translocation across the nuclear pore complex. Belongs to the exportin family.	GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.	0.987
TEA_000249	TEA_009575	A0A4S4DS30	A0A4S4DWX4	Exportin-T; tRNA nucleus export receptor which facilitates tRNA translocation across the nuclear pore complex. Belongs to the exportin family.	WPP domain-containing protein.	0.414
TEA_000249	TEA_013686	A0A4S4DS30	A0A4S4DQ95	Exportin-T; tRNA nucleus export receptor which facilitates tRNA translocation across the nuclear pore complex. Belongs to the exportin family.	WPP domain-containing protein.	0.414
TEA_000249	TEA_015487	A0A4S4DS30	A0A4S4DPL1	Exportin-T; tRNA nucleus export receptor which facilitates tRNA translocation across the nuclear pore complex. Belongs to the exportin family.	GRIP domain-containing protein.	0.421
TEA_000249	TEA_020814	A0A4S4DS30	A0A4S4DKT2	Exportin-T; tRNA nucleus export receptor which facilitates tRNA translocation across the nuclear pore complex. Belongs to the exportin family.	RanBD1 domain-containing protein.	0.421
TEA_000249	TEA_023212	A0A4S4DS30	A0A4S4D349	Exportin-T; tRNA nucleus export receptor which facilitates tRNA translocation across the nuclear pore complex. Belongs to the exportin family.	WPP domain-containing protein.	0.414
TEA_000249	TEA_025916	A0A4S4DS30	A0A4S4D005	Exportin-T; tRNA nucleus export receptor which facilitates tRNA translocation across the nuclear pore complex. Belongs to the exportin family.	RanBD1 domain-containing protein.	0.421
TEA_000249	TEA_027558	A0A4S4DS30	A0A4S4F1Y9	Exportin-T; tRNA nucleus export receptor which facilitates tRNA translocation across the nuclear pore complex. Belongs to the exportin family.	Elongation factor 1-alpha; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.	0.407
TEA_001912	TEA_000249	A0A4S4D450	A0A4S4DS30	WPP domain-containing protein.	Exportin-T; tRNA nucleus export receptor which facilitates tRNA translocation across the nuclear pore complex. Belongs to the exportin family.	0.414
TEA_001912	TEA_002365	A0A4S4D450	A0A4S4ETE0	WPP domain-containing protein.	RanBD1 domain-containing protein.	0.913
TEA_001912	TEA_007923	A0A4S4D450	A0A4S4DLS9	WPP domain-containing protein.	GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.	0.916
TEA_001912	TEA_009575	A0A4S4D450	A0A4S4DWX4	WPP domain-containing protein.	WPP domain-containing protein.	0.861
TEA_001912	TEA_015487	A0A4S4D450	A0A4S4DPL1	WPP domain-containing protein.	GRIP domain-containing protein.	0.913
TEA_001912	TEA_020814	A0A4S4D450	A0A4S4DKT2	WPP domain-containing protein.	RanBD1 domain-containing protein.	0.913
TEA_001912	TEA_025916	A0A4S4D450	A0A4S4D005	WPP domain-containing protein.	RanBD1 domain-containing protein.	0.913
TEA_002365	TEA_000249	A0A4S4ETE0	A0A4S4DS30	RanBD1 domain-containing protein.	Exportin-T; tRNA nucleus export receptor which facilitates tRNA translocation across the nuclear pore complex. Belongs to the exportin family.	0.421
TEA_002365	TEA_001912	A0A4S4ETE0	A0A4S4D450	RanBD1 domain-containing protein.	WPP domain-containing protein.	0.913
TEA_002365	TEA_007923	A0A4S4ETE0	A0A4S4DLS9	RanBD1 domain-containing protein.	GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.	0.900

page 1 of 4

Server load: low (26%) [HD]

Permalink

Network

Cooccurrence

Experiments

Coexpression

Databases

Neighborhood

Textmining

Fusion

© STRING Consortium 2024

Credits

Access

Info

About