STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Htur_1072PFAM: aminotransferase class-III; KEGG: sfu:Sfum_2649 aminotransferase class-III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (439 aa)    
Predicted Functional Partners:
Htur_0356
PFAM: Aldehyde Dehydrogenase; KEGG: pcr:Pcryo_1015 aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
 0.933
Htur_0498
PFAM: Aldehyde Dehydrogenase; KEGG: pca:Pcar_1496 NAD-dependent aldehyde dehydrogenases.
  
 0.933
Htur_0525
PFAM: Aldehyde Dehydrogenase; KEGG: pcr:Pcryo_1015 aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
 0.933
Htur_1159
PFAM: Aldehyde Dehydrogenase; KEGG: afw:Anae109_3003 aldehyde dehydrogenase.
  
 0.933
Htur_1200
PFAM: Aldehyde Dehydrogenase; KEGG: pca:Pcar_1496 NAD-dependent aldehyde dehydrogenases.
  
 0.933
mfnA
Pyridoxal-dependent decarboxylase; Catalyzes the decarboxylation of L-aspartate to produce beta- alanine; Belongs to the group II decarboxylase family. MfnA subfamily.
  
 0.931
Htur_1690
PFAM: aminotransferase class-III; KEGG: sfu:Sfum_2649 aminotransferase class-III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
  
 
0.902
Htur_2935
PFAM: aminotransferase class-III; KEGG: sfu:Sfum_2649 aminotransferase class-III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
  
 
0.902
Htur_2675
PFAM: Protein of unknown function DUF137.
     
  0.900
Htur_1073
Arginase; TIGRFAM: arginase; PFAM: Arginase/agmatinase/formiminoglutamase; KEGG: rle:RL4384 putative arginase; Belongs to the arginase family.
 
  
 0.628
Your Current Organism:
Haloterrigena turkmenica
NCBI taxonomy Id: 543526
Other names: H. turkmenica DSM 5511, Haloterrigena turkmenica ATCC 51198, Haloterrigena turkmenica DSM 5511, Haloterrigena turkmenica str. DSM 5511, Haloterrigena turkmenica strain DSM 5511
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