STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AM2010_17Pfam:pfam00800 Prephenate dehydratase. (302 aa)    
Predicted Functional Partners:
AKM08487.1
Pfam:pfam00155 Aminotransferase class I and II.
 
 
 0.988
AKM08648.1
Pfam:pfam02153 Prephenate dehydrogenase.
 
 
 0.953
hisC
Pfam:pfam00155 Aminotransferase class I and II; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.
  
 
 0.941
AKM07908.1
Pfam:pfam00155 Aminotransferase class I and II.
    
 0.938
AKM08685.1
Phenylalanine-4-hydroxylase; Pfam:pfam00351 Biopterin-dependent aromatic amino acid hydroxylase.
     
 0.905
katG
Catalase/hydroperoxidase HPI(I); Bifunctional enzyme with both catalase and broad-spectrum peroxidase activity; Belongs to the peroxidase family. Peroxidase/catalase subfamily.
     
  0.800
AKM07326.1
Phosphoserine aminotransferase; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine.
  
  
 0.779
AKM06902.1
Chorismate mutase, putative; Pfam:pfam01817 Chorismate mutase type II.
  
 
 0.705
AM2010_14
Putative regulatory protein; Pfam:pfam07726 ATPase family associated with various cellular activities (AAA).
       0.662
AM2010_15
Hypothetical protein.
       0.645
Your Current Organism:
Altererythrobacter marensis
NCBI taxonomy Id: 543877
Other names: A. marensis, Altererythrobacter marensis Seo and Lee 2010, Altererythrobacter sp. MSW-14, DSM 21428, KCTC 22370, strain MSW-14
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