Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
D521_0217 | D521_0218 | D521_0217 | D521_0218 | Short-chain dehydrogenase/reductase SDR. | Ribonuclease II. | 0.786 |
D521_0217 | D521_0219 | D521_0217 | D521_0219 | Short-chain dehydrogenase/reductase SDR. | TonB family protein. | 0.773 |
D521_0217 | aroE | D521_0217 | D521_0220 | Short-chain dehydrogenase/reductase SDR. | Shikimate 5-dehydrogenase; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA). | 0.643 |
D521_0217 | mpl | D521_0217 | D521_0216 | Short-chain dehydrogenase/reductase SDR. | UDP-N-acetylmuramate; Reutilizes the intact tripeptide L-alanyl-gamma-D-glutamyl- meso-diaminopimelate by linking it to UDP-N-acetylmuramate. Belongs to the MurCDEF family. Mpl subfamily. | 0.773 |
D521_0217 | mtgA | D521_0217 | D521_0221 | Short-chain dehydrogenase/reductase SDR. | Monofunctional biosynthetic peptidoglycan transglycosylase; Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors; Belongs to the glycosyltransferase 51 family. | 0.594 |
D521_0218 | D521_0217 | D521_0218 | D521_0217 | Ribonuclease II. | Short-chain dehydrogenase/reductase SDR. | 0.786 |
D521_0218 | D521_0219 | D521_0218 | D521_0219 | Ribonuclease II. | TonB family protein. | 0.797 |
D521_0218 | D521_0278 | D521_0218 | D521_0278 | Ribonuclease II. | TonB domain-containing protein. | 0.678 |
D521_0218 | D521_1266 | D521_0218 | D521_1266 | Ribonuclease II. | ZipA FtsZ-binding region; Essential cell division protein that stabilizes the FtsZ protofilaments by cross-linking them and that serves as a cytoplasmic membrane anchor for the Z ring. Also required for the recruitment to the septal ring of downstream cell division proteins. Belongs to the ZipA family. | 0.661 |
D521_0218 | D521_1906 | D521_0218 | D521_1906 | Ribonuclease II. | OstA family protein. | 0.654 |
D521_0218 | D521_2106 | D521_0218 | D521_2106 | Ribonuclease II. | Putative periplasmic ligand-binding sensor protein. | 0.694 |
D521_0218 | aroE | D521_0218 | D521_0220 | Ribonuclease II. | Shikimate 5-dehydrogenase; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA). | 0.672 |
D521_0218 | mpl | D521_0218 | D521_0216 | Ribonuclease II. | UDP-N-acetylmuramate; Reutilizes the intact tripeptide L-alanyl-gamma-D-glutamyl- meso-diaminopimelate by linking it to UDP-N-acetylmuramate. Belongs to the MurCDEF family. Mpl subfamily. | 0.797 |
D521_0218 | mtgA | D521_0218 | D521_0221 | Ribonuclease II. | Monofunctional biosynthetic peptidoglycan transglycosylase; Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors; Belongs to the glycosyltransferase 51 family. | 0.636 |
D521_0218 | rph | D521_0218 | D521_0717 | Ribonuclease II. | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.912 |
D521_0219 | D521_0217 | D521_0219 | D521_0217 | TonB family protein. | Short-chain dehydrogenase/reductase SDR. | 0.773 |
D521_0219 | D521_0218 | D521_0219 | D521_0218 | TonB family protein. | Ribonuclease II. | 0.797 |
D521_0219 | D521_0278 | D521_0219 | D521_0278 | TonB family protein. | TonB domain-containing protein. | 0.501 |
D521_0219 | aroE | D521_0219 | D521_0220 | TonB family protein. | Shikimate 5-dehydrogenase; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA). | 0.679 |
D521_0219 | mpl | D521_0219 | D521_0216 | TonB family protein. | UDP-N-acetylmuramate; Reutilizes the intact tripeptide L-alanyl-gamma-D-glutamyl- meso-diaminopimelate by linking it to UDP-N-acetylmuramate. Belongs to the MurCDEF family. Mpl subfamily. | 0.797 |
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