STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rbsBRibose ABC transporter, ribose-binding protein RbsB. (306 aa)    
Predicted Functional Partners:
rbsC
Ribose ABC transporter, permease protein RbsC; Belongs to the binding-protein-dependent transport system permease family.
 0.999
rbsA
Ribose ABC transporter, ATP-binding protein RsbA; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.
 
 0.997
rbsD
D-ribose pyranase; Catalyzes the interconversion of beta-pyran and beta-furan forms of D-ribose.
 
  
 0.987
rbsK
Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.
 
  
 0.984
rbsC-2
Ribose ABC transporter, permease protein RbsC; Belongs to the binding-protein-dependent transport system permease family.
 
 0.956
rbsA-2
Ribose ABC transporter, ATP-binding protein RbsA.
 
 
 0.951
rbsR
Rbs operon repressor.
 
  
0.932
BMQ_1771
Two-component sensor histidine kinase/response regulator.
 
   
0.912
BMQ_2286
Signal transduction histidine kinase with CheB and CheR activity.
  
 
 0.841
cheV
Chemotaxis protein CheV.
  
 
 0.779
Your Current Organism:
Bacillus megaterium QM B1551
NCBI taxonomy Id: 545693
Other names: B. megaterium QM B1551, Bacillus megaterium str. QM B1551, Bacillus megaterium strain QM B1551
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