STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEF85293.1Hypothetical protein; Identified by glimmer; putative. (138 aa)    
Predicted Functional Partners:
rnfB
Ferredoxin; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily.
  
 
 0.993
hndB1
NADH dehydrogenase; Identified by match to protein family HMM PF00037; match to protein family HMM PF01512.
  
 
 0.970
AEF85018.1
NADH dehydrogenase; Identified by match to protein family HMM PF00037; match to protein family HMM PF01512.
  
 
 0.969
hndB3
NAD-dependent formate dehydrogenase beta subunit; Identified by match to protein family HMM PF00037; match to protein family HMM PF01512.
  
 
 0.969
AEF84133.1
Fe-hydrogenase gamma subunit; Identified by match to protein family HMM PF01257.
  
 
 0.946
hndC3
Fe-hydrogenase gamma subunit; Identified by match to protein family HMM PF01257.
  
 
 0.946
AEF85970.1
NADH dehydrogenase subunit E; Identified by match to protein family HMM PF01257.
  
 
 0.946
AEF84391.1
Cobalamin synthesis protein/P47K family protein; Identified by match to protein family HMM PF02492.
       0.774
AEF86670.1
Veratrol:corrinoid protein metyltransferase; Belongs to the uroporphyrinogen decarboxylase family.
       0.585
AEF84155.1
Isocitrate dehydrogenase, NADP-dependent; Identified by match to protein family HMM PF00180; match to protein family HMM TIGR00127; Belongs to the isocitrate and isopropylmalate dehydrogenases family.
   
    0.579
Your Current Organism:
Treponema primitia ZAS2
NCBI taxonomy Id: 545694
Other names: T. primitia ZAS-2, Treponema primitia ZAS-2, Treponema primitia str. ZAS-2, Treponema primitia strain ZAS-2, Treponema sp. ZAS-2
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