STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEF68002.1Hypothetical protein. (161 aa)    
Predicted Functional Partners:
radC
DNA repair protein RadC; Psort location: Cytoplasmic, score: 8.87; Belongs to the UPF0758 family.
       0.773
mreC
Rod shape-determining protein MreC; Involved in formation and maintenance of cell shape.
       0.773
EEF68005.1
Putative rod shape-determining protein MreD; Psort location: CytoplasmicMembrane, score: 9.99.
       0.773
EEF68006.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.675
minD
KEGG: pen:PSEEN1445 6.0e-47 minD; septum site-determining protein MinD; Psort location: Cytoplasmic, score: 8.87.
       0.675
EEF68008.1
Hypothetical protein; Psort location: Extracellular, score: 8.82.
       0.535
EEF68000.1
HAD hydrolase, family IIB; KEGG: btk:BT9727_5077 7.7e-22 hydrolase, haloacid dehalogenase-like family; Psort location: Cytoplasmic, score: 8.87.
       0.498
EEF68001.1
Hypothetical protein.
       0.498
Your Current Organism:
Holdemania filiformis
NCBI taxonomy Id: 545696
Other names: H. filiformis DSM 12042, Holdemania filiformis DSM 12042, Holdemania filiformis str. DSM 12042, Holdemania filiformis strain DSM 12042
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.