STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEF67193.1ABC transporter, substrate-binding protein, family 5; KEGG: shn:Shewana3_2650 2.9e-34 acetate kinase K00925; Psort location: Cellwall, score: 9.17. (531 aa)    
Predicted Functional Partners:
EEF67171.1
ABC transporter, permease protein; Psort location: CytoplasmicMembrane, score: 10.00.
 0.989
oppB
Oligopeptide transport system permease protein OppB; KEGG: rha:RHA1_ro09047 4.1e-39 ABC peptide transporter, permease component K02033; Psort location: CytoplasmicMembrane, score: 10.00.
 0.985
EEF67172.1
KEGG: rha:RHA1_ro09047 1.0e-42 ABC peptide transporter, permease component K02033; Psort location: CytoplasmicMembrane, score: 10.00.
 0.985
oppC
Oligopeptide ABC transporter, permease protein OppC; KEGG: baa:BA_0884 0.0071 binding-protein-dependent transport systems inner membrane component K00294; Psort location: CytoplasmicMembrane, score: 10.00.
 0.977
EEF67194.1
KEGG: cch:Cag_1705 2.9e-63 oligopeptide/dipeptide ABC transporter, ATP-binding protein-like K02032; Psort location: CytoplasmicMembrane, score: 9.49.
 
 0.963
EEF67170.1
KEGG: cch:Cag_1883 7.6e-31 oligopeptide/dipeptide ABC transporter, ATP-binding protein-like K02031; Psort location: CytoplasmicMembrane, score: 9.49.
 
 0.958
EEF69369.1
KEGG: reh:H16_B0717 1.0e-74 dppD3; ABC-type transporter, ATPase component: PepT family; Psort location: CytoplasmicMembrane, score: 9.49.
 
 0.921
EEF69370.1
KEGG: reh:H16_B0716 2.5e-96 dppF3; ABC-type transporter, ATPase component: PepT family; Psort location: CytoplasmicMembrane, score: 9.49.
 0.916
EEF67195.1
Oligopeptide/dipeptide ABC transporter, ATP-binding protein domain protein; KEGG: reh:H16_A3295 8.7e-10 ABC-type transporter, ATPase component: PepT family.
  
 
 0.888
EEF69404.1
ABC transporter, substrate-binding protein, family 5; KEGG: shn:Shewana3_2650 2.0e-12 acetate kinase K00925; Psort location: Extracellular, score: 7.62.
 
 
0.860
Your Current Organism:
Holdemania filiformis
NCBI taxonomy Id: 545696
Other names: H. filiformis DSM 12042, Holdemania filiformis DSM 12042, Holdemania filiformis str. DSM 12042, Holdemania filiformis strain DSM 12042
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