STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFW56509.1DNA-binding transcriptional regulator, FadR family. (234 aa)    
Predicted Functional Partners:
SFW57424.1
DNA-binding transcriptional regulator, GntR family; Manually curated.
  
  
 0.730
SFW80161.1
DNA-binding transcriptional regulator, FadR family.
  
     0.725
SFW85678.1
DNA-binding transcriptional regulator, FadR family.
  
     0.718
SFW84969.1
DNA-binding transcriptional regulator, GntR family.
  
  
 0.707
SFW87840.1
DNA-binding transcriptional regulator, GntR family.
  
  
 0.703
SFW71590.1
DNA-binding transcriptional regulator, GntR family.
  
  
 0.702
SFW52755.1
DNA-binding transcriptional regulator, FadR family.
  
     0.692
SFW92434.1
DNA-binding transcriptional regulator, FadR family.
  
     0.686
SFW79858.1
DNA-binding transcriptional regulator, GntR family.
  
  
 0.675
SFW82779.1
DNA-binding transcriptional regulator, GntR family.
  
  
 0.670
Your Current Organism:
Amycolatopsis australiensis
NCBI taxonomy Id: 546364
Other names: A. australiensis, Amycolatopsis australiensis Tan et al. 2006, Amycolatopsis sp. GY048, Amycolatopsis sp. GY049, Amycolatopsis sp. GY056, Amycolatopsis sp. GY064, Amycolatopsis sp. GY269, Amycolatopsis sp. GY276, Amycolatopsis sp. GY286, DSM 44671, JCM 15587, NCIMB 14142, strain GY048
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