STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ARO4Phospho-2-dehydro-3-deoxyheptonate aldolase. (382 aa)    
Predicted Functional Partners:
CTRI78_v011003
3-phosphoshikimate 1-carboxyvinyltransferase; The AROM polypeptide catalyzes 5 consecutive enzymatic reactions in prechorismate polyaromatic amino acid biosynthesis. In the 2nd section; belongs to the EPSP synthase family. In the 4th section; belongs to the type-I 3-dehydroquinase family. In the N-terminal section; belongs to the dehydroquinate synthase family.
   
 
 0.856
CTRI78_v005256
Demethyl-4-deoxygadusol synthase.
   
 
 0.856
aro-8
Phospho-2-dehydro-3-deoxyheptonate aldolase; Belongs to the class-II DAHP synthase family.
    
 0.760
AMT16
Phospho-2-dehydro-3-deoxyheptonate aldolase.
  
  
 
0.745
amdS-2
Acetamidase.
    
 0.729
aro-2
Chorismate synthase.
   
  
 0.680
CTRI78_v000136
Uncharacterized protein.
    
  0.605
CTRI78_v009131
Uncharacterized protein.
    
 0.548
sfc4
Transcription factor tau subunit sfc4.
    
  0.477
sfc1
Transcription factor tau subunit sfc1.
    
  0.472
Your Current Organism:
Colletotrichum trifolii
NCBI taxonomy Id: 5466
Other names: BBA 70709, BPI 399624, C. trifolii, CBS 158.83
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