STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sirO-0Oxidoreductase sirO. (324 aa)    
Predicted Functional Partners:
sos7
Kinetochore protein Sos7.
    
  0.591
rpl37
Ribosomal protein L37; Binds to the 23S rRNA.
    
  0.591
NUP133
Nucleoporin NUP133.
   
 0.572
nup-20
Protein transport protein sec13; Belongs to the WD repeat SEC13 family.
    
 0.566
SEH1
Nucleoporin SEH1; Belongs to the WD repeat SEC13 family.
    
 0.544
NUP49
Nucleoporin NUP49.
    
 0.542
CTRI78_v011251
Putative 4-hydroxy-2-oxoglutarate aldolase; Belongs to the DapA family.
   
  0.449
dapA-1
4-hydroxy-tetrahydrodipicolinate synthase; Belongs to the DapA family.
   
  0.449
CTRI78_v010338
Putative 4-hydroxy-2-oxoglutarate aldolase.
   
  0.449
gaaC
L-threo-3-deoxy-hexylosonate aldolase; Belongs to the DapA family.
   
  0.449
Your Current Organism:
Colletotrichum trifolii
NCBI taxonomy Id: 5466
Other names: BBA 70709, BPI 399624, C. trifolii, CBS 158.83
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.