STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SLD2DNA replication regulator SLD2. (229 aa)    
Predicted Functional Partners:
rpn2
26S proteasome regulatory subunit RPN2; Acts as a regulatory subunit of the 26S proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.
   
 0.995
CTRI78_v006514
26S proteasome regulatory subunit 4-like protein; Belongs to the AAA ATPase family.
   
 0.995
rpn-8
26S proteasome regulatory subunit rpn-8.
   
 0.995
RPT5
26S proteasome regulatory subunit 6A; Belongs to the AAA ATPase family.
   
 0.995
rpn6
Putative 26S proteasome regulatory subunit rpn6.
   
 0.995
rpn7
Putative 26S proteasome regulatory subunit rpn7.
   
 0.995
CTRI78_v003949
26S proteasome non-ATPase regulatory subunit 4-like protein.
   
 0.994
rpt4
Putative 26S proteasome subunit rpt4; Belongs to the AAA ATPase family.
   
 0.994
CTRI78_v002969
26S proteasome regulatory subunit 8-like protein; Belongs to the AAA ATPase family.
   
 0.994
CTRI78_v009163
Proteasome subunit alpha type.
   
 0.993
Your Current Organism:
Colletotrichum trifolii
NCBI taxonomy Id: 5466
Other names: BBA 70709, BPI 399624, C. trifolii, CBS 158.83
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