STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pgaX-2Exopolygalacturonase X-2; Belongs to the glycosyl hydrolase 28 family. (442 aa)    
Predicted Functional Partners:
abfB
Putative alpha-L-arabinofuranosidase B.
     
 0.831
PGN1
Polygalacturonase.
  
  
0.826
PG1
Endopolygalacturonase 1.
  
  
0.825
abfA
Alpha-L-arabinofuranosidase A.
     
 0.812
abfC
Putative alpha-L-arabinofuranosidase C.
     
 0.812
bxlB
Putative exo-1,4-beta-xylosidase bxlB.
    
  0.715
nuc-2
Ankyrin repeat protein nuc-2.
    
 0.695
pgxB-1
Putative exopolygalacturonase B; Belongs to the glycosyl hydrolase 28 family.
  
  
 
0.686
crp-79
Ubiquitin-60S ribosomal protein L40.
    
  0.678
CTRI78_v008142
60S ribosomal protein L21-B.
   
   0.670
Your Current Organism:
Colletotrichum trifolii
NCBI taxonomy Id: 5466
Other names: BBA 70709, BPI 399624, C. trifolii, CBS 158.83
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.