STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CTRI78_v005960Uncharacterized protein. (1033 aa)    
Predicted Functional Partners:
CTRI78_v005961
tRNA N6-adenosine threonylcarbamoyltransferase, mitochondrial; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in mitochondrial tRNAs that read codons beginning with adenine. Probably involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37. Involved in mitochondrial genome maintenance.
 
      0.862
Usp34
Ubiquitin carboxyl-terminal hydrolase 34; Belongs to the peptidase C19 family.
  
 
  0.808
gsk3
Protein kinase gsk3; Belongs to the protein kinase superfamily.
    
 0.797
CTRI78_v009156
Uncharacterized protein.
   
  0.757
lid2
Lid2 complex component lid2.
   
  0.757
UBP2
Ubiquitin carboxyl-terminal hydrolase 2; Belongs to the peptidase C19 family.
    
  0.749
ubp21
Ubiquitin carboxyl-terminal hydrolase 21; Belongs to the peptidase C19 family.
    
  0.749
CTRI78_v010300
ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.
    
  0.738
CTRI78_v000822
Uncharacterized protein.
    
 0.662
CTRI78_v000528
Uncharacterized protein.
    
 0.662
Your Current Organism:
Colletotrichum trifolii
NCBI taxonomy Id: 5466
Other names: BBA 70709, BPI 399624, C. trifolii, CBS 158.83
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