STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
csn-7aCOP9 signalosome complex subunit 7a. (300 aa)    
Predicted Functional Partners:
RRI1
COP9 signalosome complex subunit 5.
    
 0.999
csn-4
COP9 signalosome complex subunit 4.
  
 0.999
csn-1
COP9 signalosome complex subunit 1.
   
 0.999
csn-3
COP9 signalosome complex subunit 3.
    
 0.998
csn-6
COP9 signalosome complex subunit 6.
    
 0.988
csnB
COP9 signalosome complex subunit 2.
    
 0.986
CTRI78_v005765
Eukaryotic translation initiation factor 3 subunit F; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation.
    
 0.902
Rbx1
E3 ubiquitin-protein ligase RBX1.
   
 0.894
rpn11
26S proteasome regulatory subunit rpn11.
    
 0.879
CTRI78_v009621
Uncharacterized protein.
    
 0.879
Your Current Organism:
Colletotrichum trifolii
NCBI taxonomy Id: 5466
Other names: BBA 70709, BPI 399624, C. trifolii, CBS 158.83
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