STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CTRI78_v002326Uncharacterized protein. (324 aa)    
Predicted Functional Partners:
SAK
Serine/threonine-protein kinase PLK4.
    
 0.768
plo1
Serine/threonine-protein kinase plo1.
    
 0.768
RPB3
DNA-directed RNA polymerase II subunit RPB3.
    
 0.748
DHH1
ATP-dependent RNA helicase DHH1; Belongs to the DEAD box helicase family.
   
 0.718
arp5
Actin-like protein arp5; Belongs to the actin family.
    
 0.703
RVB1
RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes.
    
 0.695
SPT16
FACT complex subunit SPT16.
    
 
 0.693
RPO26
DNA-directed RNA polymerases I, II, and III subunit RPABC2.
    
 0.688
hH2Az
Histone H2A; Belongs to the histone H2A family.
    
 0.685
rpb10
DNA-directed RNA polymerases I, II, and III subunit RPABC5.
    
  0.677
Your Current Organism:
Colletotrichum trifolii
NCBI taxonomy Id: 5466
Other names: BBA 70709, BPI 399624, C. trifolii, CBS 158.83
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