CTRI78_v003030 protein (Colletotrichum trifolii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CTRI78_v003030

F-box domain-containing protein. (636 aa)

Predicted Functional Partners:

CTRI78_v000136

0.605

sfc4

0.477

sfc1

0.472

pmt3

0.455

lamA

0.451

DUR1,2

0.451

sec16

0.443

CTRI78_v003797

0.437

CTRI78_v007236

0.431

CTRI78_v005413

0.421

Your Current Organism:

Colletotrichum trifolii

NCBI taxonomy Id: 5466
Other names: BBA 70709, BPI 399624, C. trifolii, CBS 158.83

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CTRI78_v000136	CTRI78_v003030	A0A4R8RT01	A0A4R8RQA2	Uncharacterized protein.	F-box domain-containing protein.	0.605
CTRI78_v000136	CTRI78_v007236	A0A4R8RT01	A0A4R8RK19	Uncharacterized protein.	Uncharacterized protein.	0.519
CTRI78_v003030	CTRI78_v000136	A0A4R8RQA2	A0A4R8RT01	F-box domain-containing protein.	Uncharacterized protein.	0.605
CTRI78_v003030	CTRI78_v003797	A0A4R8RQA2	A0A4R8RIQ1	F-box domain-containing protein.	Uncharacterized protein.	0.437
CTRI78_v003030	CTRI78_v005413	A0A4R8RQA2	A0A4V6QEX7	F-box domain-containing protein.	GRIP domain-containing protein.	0.421
CTRI78_v003030	CTRI78_v007236	A0A4R8RQA2	A0A4R8RK19	F-box domain-containing protein.	Uncharacterized protein.	0.431
CTRI78_v003030	DUR1,2	A0A4R8RQA2	A0A4R8RXF2	F-box domain-containing protein.	Urea amidolyase.	0.451
CTRI78_v003030	lamA	A0A4R8RQA2	A0A4R8QXY2	F-box domain-containing protein.	Putative urea carboxylase.	0.451
CTRI78_v003030	pmt3	A0A4R8RQA2	A0A4R8QRS8	F-box domain-containing protein.	Ubiquitin-like protein pmt3/smt3.	0.455
CTRI78_v003030	sec16	A0A4R8RQA2	A0A4R8RZI7	F-box domain-containing protein.	Protein transport protein sec16; Involved in the initiation of assembly of the COPII coat required for the formation of transport vesicles from the endoplasmic reticulum (ER) and the selection of cargo molecules. Also involved in autophagy; Belongs to the SEC16 family.	0.443
CTRI78_v003030	sfc1	A0A4R8RQA2	A0A4R8RMW5	F-box domain-containing protein.	Transcription factor tau subunit sfc1.	0.472
CTRI78_v003030	sfc4	A0A4R8RQA2	A0A4R8Q312	F-box domain-containing protein.	Transcription factor tau subunit sfc4.	0.477
CTRI78_v003797	CTRI78_v003030	A0A4R8RIQ1	A0A4R8RQA2	Uncharacterized protein.	F-box domain-containing protein.	0.437
CTRI78_v003797	sec16	A0A4R8RIQ1	A0A4R8RZI7	Uncharacterized protein.	Protein transport protein sec16; Involved in the initiation of assembly of the COPII coat required for the formation of transport vesicles from the endoplasmic reticulum (ER) and the selection of cargo molecules. Also involved in autophagy; Belongs to the SEC16 family.	0.667
CTRI78_v005413	CTRI78_v003030	A0A4V6QEX7	A0A4R8RQA2	GRIP domain-containing protein.	F-box domain-containing protein.	0.421
CTRI78_v005413	sec16	A0A4V6QEX7	A0A4R8RZI7	GRIP domain-containing protein.	Protein transport protein sec16; Involved in the initiation of assembly of the COPII coat required for the formation of transport vesicles from the endoplasmic reticulum (ER) and the selection of cargo molecules. Also involved in autophagy; Belongs to the SEC16 family.	0.512
CTRI78_v007236	CTRI78_v000136	A0A4R8RK19	A0A4R8RT01	Uncharacterized protein.	Uncharacterized protein.	0.519
CTRI78_v007236	CTRI78_v003030	A0A4R8RK19	A0A4R8RQA2	Uncharacterized protein.	F-box domain-containing protein.	0.431
CTRI78_v007236	pmt3	A0A4R8RK19	A0A4R8QRS8	Uncharacterized protein.	Ubiquitin-like protein pmt3/smt3.	0.852
DUR1,2	CTRI78_v003030	A0A4R8RXF2	A0A4R8RQA2	Urea amidolyase.	F-box domain-containing protein.	0.451