STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CTRI78_v002156Uncharacterized protein. (243 aa)    
Predicted Functional Partners:
tsr1
Ribosome biogenesis protein tsr1.
   
  0.577
CTRI78_v004518
Uncharacterized protein.
   
  0.573
RPS8B
40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family.
    
  0.563
RPS1
40S ribosomal protein S1; Belongs to the eukaryotic ribosomal protein eS1 family.
    
  0.562
crp-15
40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family.
    
  0.562
crp-6
40S ribosomal protein S27.
    
  0.560
RPS2
40S ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family.
    
  0.551
CTRI78_v000558
37S ribosomal protein S5; Belongs to the universal ribosomal protein uS5 family.
    
  0.551
RPS15
40S ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family.
    
  0.549
ltv1
Protein LTV1.
   
  0.547
Your Current Organism:
Colletotrichum trifolii
NCBI taxonomy Id: 5466
Other names: BBA 70709, BPI 399624, C. trifolii, CBS 158.83
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