STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TAF14Transcription initiation factor TFIID subunit 14. (259 aa)    
Predicted Functional Partners:
tfg2
Transcription initiation factor IIF subunit beta.
   
 0.975
tfg1
Transcription initiation factor IIF subunit alpha.
    
 0.975
RPB3
DNA-directed RNA polymerase II subunit RPB3.
   
 0.959
RPB9
DNA-directed RNA polymerase II subunit RPB9.
    
 0.951
Rpb11
DNA-directed RNA polymerase II subunit RPB11.
   
 0.945
rpb4
DNA-directed RNA polymerase II subunit rpb4.
   
 0.944
RPB5
DNA-directed RNA polymerases I, II, and III subunit RPABC1.
    
  0.942
SWC4
SWR1-complex protein 4.
   
 0.920
taf2
Transcription initiation factor TFIID subunit 2.
    
 
 0.912
RPO26
DNA-directed RNA polymerases I, II, and III subunit RPABC2.
    
  0.912
Your Current Organism:
Colletotrichum trifolii
NCBI taxonomy Id: 5466
Other names: BBA 70709, BPI 399624, C. trifolii, CBS 158.83
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.