CTRI78_v008718 protein (Colletotrichum trifolii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CTRI78_v008718

Uncharacterized protein. (250 aa)

Predicted Functional Partners:

crb3

0.570

IPI1

0.556

NOP7

0.539

CTRI78_v001042

0.492

erb1

0.489

GRC3

0.480

CTRI78_v007236

0.471

ain1

0.452

CTRI78_v000732

0.452

NUG1

0.451

Your Current Organism:

Colletotrichum trifolii

NCBI taxonomy Id: 5466
Other names: BBA 70709, BPI 399624, C. trifolii, CBS 158.83

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CTRI78_v000732	CTRI78_v008718	A0A4R8RXI2	A0A4V3HU74	CRIB domain-containing protein.	Uncharacterized protein.	0.452
CTRI78_v001042	CTRI78_v008718	A0A4V3HXD0	A0A4V3HU74	Uncharacterized protein.	Uncharacterized protein.	0.492
CTRI78_v001042	GRC3	A0A4V3HXD0	A0A4R8R1B0	Uncharacterized protein.	Polynucleotide 5'-hydroxyl-kinase GRC3.	0.999
CTRI78_v001042	IPI1	A0A4V3HXD0	A0A4R8R628	Uncharacterized protein.	Pre-rRNA-processing protein IPI1.	0.896
CTRI78_v001042	NOP7	A0A4V3HXD0	A0A4R8QXG6	Uncharacterized protein.	Pescadillo homolog; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.790
CTRI78_v001042	NUG1	A0A4V3HXD0	A0A4R8RIK3	Uncharacterized protein.	Nuclear GTP-binding protein NUG1.	0.775
CTRI78_v001042	crb3	A0A4V3HXD0	A0A4R8RL11	Uncharacterized protein.	Pre-rRNA-processing protein crb3/ipi3.	0.955
CTRI78_v001042	erb1	A0A4V3HXD0	A0A4R8RRM5	Uncharacterized protein.	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.826
CTRI78_v007236	CTRI78_v008718	A0A4R8RK19	A0A4V3HU74	Uncharacterized protein.	Uncharacterized protein.	0.471
CTRI78_v007236	crb3	A0A4R8RK19	A0A4R8RL11	Uncharacterized protein.	Pre-rRNA-processing protein crb3/ipi3.	0.545
CTRI78_v008718	CTRI78_v000732	A0A4V3HU74	A0A4R8RXI2	Uncharacterized protein.	CRIB domain-containing protein.	0.452
CTRI78_v008718	CTRI78_v001042	A0A4V3HU74	A0A4V3HXD0	Uncharacterized protein.	Uncharacterized protein.	0.492
CTRI78_v008718	CTRI78_v007236	A0A4V3HU74	A0A4R8RK19	Uncharacterized protein.	Uncharacterized protein.	0.471
CTRI78_v008718	GRC3	A0A4V3HU74	A0A4R8R1B0	Uncharacterized protein.	Polynucleotide 5'-hydroxyl-kinase GRC3.	0.480
CTRI78_v008718	IPI1	A0A4V3HU74	A0A4R8R628	Uncharacterized protein.	Pre-rRNA-processing protein IPI1.	0.556
CTRI78_v008718	NOP7	A0A4V3HU74	A0A4R8QXG6	Uncharacterized protein.	Pescadillo homolog; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.539
CTRI78_v008718	NUG1	A0A4V3HU74	A0A4R8RIK3	Uncharacterized protein.	Nuclear GTP-binding protein NUG1.	0.451
CTRI78_v008718	ain1	A0A4V3HU74	A0A4R8RMD8	Uncharacterized protein.	Alpha-actinin-like protein 1.	0.452
CTRI78_v008718	crb3	A0A4V3HU74	A0A4R8RL11	Uncharacterized protein.	Pre-rRNA-processing protein crb3/ipi3.	0.570
CTRI78_v008718	erb1	A0A4V3HU74	A0A4R8RRM5	Uncharacterized protein.	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.489