STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
parnPoly(A)-specific ribonuclease PARN. (543 aa)    
Predicted Functional Partners:
Khsrp
Far upstream element-binding protein 2.
    
 0.744
PAB1
Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.
    
 0.728
RRP46
Exosome complex component RRP46.
     
 0.715
CTRI78_v009914
Uncharacterized protein.
     
 0.711
dcp2
mRNA decapping complex subunit 2.
     
 0.711
CTRI78_v002842
Uncharacterized protein.
     
 0.711
tif451
Eukaryotic translation initiation factor 4E-1; Belongs to the eukaryotic initiation factor 4E family.
     
 0.710
rrp4
Exosome complex component rrp4.
     
 0.708
SSD1
Virulence protein SSD1.
     
 0.706
dis3
Exosome complex exonuclease dis3; Belongs to the RNR ribonuclease family.
     
 0.706
Your Current Organism:
Colletotrichum trifolii
NCBI taxonomy Id: 5466
Other names: BBA 70709, BPI 399624, C. trifolii, CBS 158.83
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