STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEF77606.1KEGG: shn:Shewana3_3590 2.2e-24 single-strand binding protein K00655. (151 aa)    
Predicted Functional Partners:
EEF76980.1
KEGG: bfr:BF0712 0. DNA polymerase III alpha subunit K02337; Psort location: Cytoplasmic, score: 9.26.
   
 0.824
mutY
A/G-specific adenine glycosylase; Adenine glycosylase active on G-A mispairs.
     
 0.811
priA
Primosomal protein N; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily.
  
 
 
 0.745
EEF77608.1
Hypothetical protein; KEGG: bcz:BCZK1719 0.00015 ffp; 4'-phosphopantetheinyl transferase K01005; Psort location: Cytoplasmic, score: 8.96.
  
  
 0.702
gldE
Gliding motility-associated protein GldE; KEGG: eci:UTI89_C0656 1.2e-41 ybeX; putative transport protein K06189; Psort location: CytoplasmicMembrane, score: 9.16.
       0.696
hup-3
DNA-binding protein HU; Belongs to the bacterial histone-like protein family.
  
  
 0.673
polA
DNA-directed DNA polymerase; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
 
 
 0.648
holB
KEGG: bth:BT3820 3.7e-118 putative DNA polymerase III, delta subunit K02341; Psort location: Cytoplasmic, score: 8.96.
    
 
 0.639
dnaX
DNA polymerase III, subunit gamma and tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity.
    
 
 0.639
rpsG
Ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.
 
   0.626
Your Current Organism:
Bacteroides coprophilus
NCBI taxonomy Id: 547042
Other names: B. coprophilus DSM 18228 = JCM 13818, Bacteroides coprophilus CB42, Bacteroides coprophilus DSM 18228, Bacteroides coprophilus DSM 18228 = JCM 13818, Bacteroides coprophilus JCM 13818, Bacteroides coprophilus JCM 13818 = DSM 18228
Server load: low (24%) [HD]