STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEF78133.1Rhs element Vgr protein. (585 aa)    
Predicted Functional Partners:
EEF78134.1
Hypothetical protein.
 
  
 0.888
EEF75942.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
 
  
 0.882
EEF78189.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
 
  
 0.882
EEF78141.1
Hypothetical protein.
 
  
 0.840
EEF78138.1
KEGG: mba:Mbar_A1626 0.0095 hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
 
     0.822
EEF78142.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.46.
 
   
 0.822
EEF75935.1
Hypothetical protein.
 
  
 0.798
EEF75940.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
 
  
 0.797
EEF78187.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
 
  
 0.797
EEF75941.1
Putative lysozyme; Psort location: Cytoplasmic, score: 8.96.
 
  
 0.793
Your Current Organism:
Bacteroides coprophilus
NCBI taxonomy Id: 547042
Other names: B. coprophilus DSM 18228 = JCM 13818, Bacteroides coprophilus CB42, Bacteroides coprophilus DSM 18228, Bacteroides coprophilus DSM 18228 = JCM 13818, Bacteroides coprophilus JCM 13818, Bacteroides coprophilus JCM 13818 = DSM 18228
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.