STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mmah_0013COGs: COG1423 ATP-dependent DNA ligase homolog of eukaryotic ligase III; InterPro IPR001072:IPR012310; KEGG: aeh:Mlg_2553 ATP dependent DNA ligase; PFAM: ATP dependent DNA ligase; SPTR: Q46DV0 Putative uncharacterized protein; PFAM: ATP dependent DNA ligase domain; TIGRFAM: conserved hypothetical protein TIGR01209. (388 aa)    
Predicted Functional Partners:
Mmah_0014
COGs: COG3448 CBS-domain-containing membrane protein; InterPro IPR000644; KEGG: bja:blr4646 hypothetical protein; PFAM: CBS domain containing protein; SMART: CBS domain containing protein; SPTR: Q12V77 CBS domain protein; PFAM: CBS domain.
 
     0.860
Mmah_1978
Protein of unknown function UPF0278; RNA-free RNase P that catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. Belongs to the HARP family.
 
     0.815
Mmah_0015
COGs: COG3448 CBS-domain-containing membrane protein; InterPro IPR000644; KEGG: sme:SMc00815 inositol-5-monophosphate dehydrogenase; PFAM: CBS domain containing protein; SMART: CBS domain containing protein; SPTR: Q12V76 CBS domain protein; PFAM: CBS domain.
 
     0.788
Mmah_0012
COGs: COG3276 Selenocysteine-specific translation elongation factor; InterPro IPR004161; KEGG: dar:Daro_1810 selenocysteine-specific translation elongation factor SelB; PFAM: elongation factor Tu domain 2 protein; SPTR: Q12V79 Elongation factor Tu, domain 2; PFAM: Elongation factor Tu domain 2; Elongation factor Tu GTP binding domain.
       0.712
Mmah_0016
COGs: COG3448 CBS-domain-containing membrane protein; InterPro IPR000644; KEGG: dde:Dde_0765 CBS; PFAM: CBS domain containing protein; SMART: CBS domain containing protein; SPTR: Q12V75 CBS domain protein; PFAM: CBS domain.
 
     0.706
Mmah_0017
COGs: COG3448 CBS-domain-containing membrane protein; InterPro IPR000644; KEGG: rpa:RPA4246 CBS/transport-associated domain-containing protein; PFAM: CBS domain containing protein; SMART: CBS domain containing protein; SPTR: Q12V74 CBS domain protein; PFAM: CBS domain.
 
     0.635
Mmah_0115
Abortive infection protein; InterPro IPR003675; KEGG: pag:PLES_55221 hypothetical protein; PFAM: Abortive infection protein; SPTR: Q12UI9 Abortive infection protein; PFAM: CAAX amino terminal protease family.
  
     0.624
Mmah_1973
Protein of unknown function DUF166; COGs: COG1810 conserved hypothetical protein; InterPro IPR003745; KEGG: dal:Dalk_4871 protein of unknown function DUF166; PFAM: Protein of unknown function DUF166; SPTR: Q8PXV6 Conserved protein; PFAM: Uncharacterized ArCR, COG1810.
 
     0.587
Mmah_0295
AAA ATPase central domain protein; COGs: COG1223 ATPase (AAA+ superfamily); InterPro IPR003959:IPR003593:IPR003960; KEGG: hypothetical protein; PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; SPTR: Q8TLK7 ATPase, AAA family; PFAM: ATPase family associated with various cellular activities (AAA).
  
     0.542
Mmah_1995
COGs: COG0417 DNA polymerase elongation subunit (family B); InterProIPR017966:IPR006134:IPR006133:IPR006172:IPR 017964:IPR004578; KEGG: CaJ7_0319; hypothetical protein; K02327 DNA polymerase delta subunit 1; PFAM: DNA polymerase B region; DNA polymerase B exonuclease; PRIAM: DNA-directed DNA polymerase; SMART: DNA-directed DNA polymerase B; SPTR: Q12VE4 DNA polymerase; TIGRFAM: DNA polymerase Pol2; PFAM: DNA polymerase family B; DNA polymerase family B, exonuclease domain; TIGRFAM: DNA polymerase (pol2).
 
    0.517
Your Current Organism:
Methanohalophilus mahii
NCBI taxonomy Id: 547558
Other names: M. mahii DSM 5219, Methanohalophilus mahii DSM 5219, Methanohalophilus mahii str. DSM 5219, Methanohalophilus mahii strain DSM 5219
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