STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amyAGlycoside hydrolase family protein; KEGG: hma:rrnAC1962 putative alpha-D-14-glucosidase; PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain. (752 aa)    
Predicted Functional Partners:
Nmag_1149
Glycoside transferase domain protein; KEGG: hla:Hlac_0545 glucan 14-alpha-glucosidase.
 
  
 0.947
Nmag_1151
ABC-type transport system periplasmic substrate-binding protein (probable substrate sugar); PFAM: extracellular solute-binding protein family 1; KEGG: hla:Hlac_0632 extracellular solute-binding protein family 1.
 
  
 0.843
Nmag_1153
ABC-type transport system permease protein (probable substrate sugar); PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: hla:Hlac_0630 binding-protein-dependent transport systems inner membrane component.
 
  
 0.792
Nmag_1676
KEGG: hut:Huta_1663 HAD-superfamily hydrolase, subfamily IA, variant 3; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase.
 
  
 0.773
Nmag_1152
ABC-type transport system permease protein (probable substrate sugar); PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: hla:Hlac_0631 binding-protein-dependent transport systems inner membrane component.
 
  
 0.722
tsgB
ABC-type transport system permease protein (probable substrate sugar); PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: hla:Hlac_2484 binding-protein-dependent transport systems inner membrane component.
 
  
 0.704
Nmag_2237
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: tsi:TSIB_0359 trehalose/maltose ABC transporter, permease component.
 
  
 0.687
argF
TIGRFAM: ornithine carbamoyltransferase; KEGG: hmu:Hmuk_0777 ornithine carbamoyltransferase; PFAM: aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain; aspartate/ornithine carbamoyltransferase Asp/Orn-binding region; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. OTCase family.
  
  
 0.679
Nmag_0692
PFAM: amino acid permease-associated region; UspA domain protein; KEGG: hma:rrnAC0759 cationic amino acid transporter.
  
 0.657
Nmag_1042
Transport protein (probable substrate cationic amino acids); PFAM: amino acid permease-associated region; UspA domain protein; KEGG: nph:NP0646A stress response protein/transporter 7 (substrates cationic amino acids).
  
 0.657
Your Current Organism:
Natrialba magadii
NCBI taxonomy Id: 547559
Other names: N. magadii ATCC 43099, Natrialba magadii ATCC 43099, Natrialba magadii DSM 3394, Natrialba magadii MS3, Natrialba magadii NCIMB 2190, Natrialba magadii str. ATCC 43099, Natrialba magadii strain ATCC 43099
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