STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpl40eKEGG: hla:Hlac_0373 ribosomal protein L40e; Belongs to the eukaryotic ribosomal protein eL40 family. (49 aa)    
Predicted Functional Partners:
ubaA3
Homolog to SAMP-activating enzyme E1; PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: mxa:MXAN_7285 ThiF family protein.
   
 0.999
rpl32e
PFAM: Ribosomal protein L32e; KEGG: nph:NP4888A 50S ribosomal protein L32e; Belongs to the eukaryotic ribosomal protein eL32 family.
  
 0.998
rps24e
PFAM: Ribosomal protein S24e; KEGG: nph:NP5074A 30S ribosomal protein S24e; Belongs to the eukaryotic ribosomal protein eS24 family.
 
 0.998
rps6e
PFAM: Ribosomal protein S6e; KEGG: hmu:Hmuk_0255 ribosomal protein S6e; Belongs to the eukaryotic ribosomal protein eS6 family.
   
 0.998
rps19e
30S ribosomal protein S19e; May be involved in maturation of the 30S ribosomal subunit. Belongs to the eukaryotic ribosomal protein eS19 family.
   
 0.998
rps19
30S ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.
   
 0.997
rps3
30S ribosomal protein S3; Binds the lower part of the 30S subunit head. Belongs to the universal ribosomal protein uS3 family.
  
 0.997
rps17
30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.
   
 0.997
rps4e
KEGG: hla:Hlac_2437 ribosomal protein S4E, central domain protein; PFAM: Ribosomal protein S4E, central domain protein; Ribosomal protein S4E domain protein; RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein; Belongs to the eukaryotic ribosomal protein eS4 family.
   
 0.997
rps13
30S ribosomal protein S13; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement; Belongs to the universal ribosomal protein uS13 family.
  
 0.997
Your Current Organism:
Natrialba magadii
NCBI taxonomy Id: 547559
Other names: N. magadii ATCC 43099, Natrialba magadii ATCC 43099, Natrialba magadii DSM 3394, Natrialba magadii MS3, Natrialba magadii NCIMB 2190, Natrialba magadii str. ATCC 43099, Natrialba magadii strain ATCC 43099
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