STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ybaLBelongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family (564 aa)    
Predicted Functional Partners:
tsx
annotation not available
     
 0.714
kefB
Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family
 
   
0.629
nhaP2
annotation not available
  
  
 0.560
mscL
Channel that opens in response to stretch forces in the membrane lipid bilayer. May participate in the regulation of osmotic pressure changes within the cell
     
 0.462
kefG
Regulatory subunit of a potassium efflux system that confers protection against electrophiles. Required for full activity of KefB.
  
 
 0.428
dsbB
Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein
 
     0.416
recQ
annotation not available
  
    0.406
secD_1
Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
       0.402
secF
Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
       0.402
nagA
annotation not available
       0.402
Your Current Organism:
Pantoea agglomerans
NCBI taxonomy Id: 549
Other names: ATCC 27155, Bacillus milletiae, Bacterium herbicola, CCUG 539, CFBP 3845, CIP 57.51, DSM 3493, Enterobacter agglomerans, Erwinia herbicola, Erwinia milletiae, ICMP 12534, ICPB 3435, NBRC 102470, NCTC 9381, P. agglomerans, Pantoea herbicola, Pseudomonas herbicola
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