STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rumBBelongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family (396 aa)    
Predicted Functional Partners:
ybjO
annotation not available
     
 0.768
tmcA
annotation not available
   
    0.670
rsmF
Specifically methylates the cytosine at position 1407 (m5C1407) of 16S rRNA
   
 
 0.656
rsmB
Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
 
 
 0.644
potH_5
annotation not available
       0.520
ydcV
annotation not available
       0.520
potG
annotation not available
       0.515
rsmH
Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA
  
  
 0.439
rsmA
Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits
  
 
 0.433
potF
Required for the activity of the bacterial periplasmic transport system of putrescine
       0.429
Your Current Organism:
Pantoea agglomerans
NCBI taxonomy Id: 549
Other names: ATCC 27155, Bacillus milletiae, Bacterium herbicola, CCUG 539, CFBP 3845, CIP 57.51, DSM 3493, Enterobacter agglomerans, Erwinia herbicola, Erwinia milletiae, ICMP 12534, ICPB 3435, NBRC 102470, NCTC 9381, P. agglomerans, Pantoea herbicola, Pseudomonas herbicola
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