STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BW31_01046annotation not available (209 aa)    
Predicted Functional Partners:
holE
annotation not available
  
     0.740
rsmD
Specifically methylates the guanine in position 966 of 16S rRNA in the assembled 30S particle
      0.733
BW31_00584
annotation not available
  
     0.692
BW31_01045
annotation not available
 
     0.686
BW31_01205
annotation not available
  
     0.683
BW31_01548
annotation not available
  
     0.683
BW31_01044
annotation not available
 
     0.681
BW31_01609
annotation not available
  
     0.680
pgpC
annotation not available
  
    0.666
ydgH_3
annotation not available
  
     0.658
Your Current Organism:
Pantoea agglomerans
NCBI taxonomy Id: 549
Other names: ATCC 27155, Bacillus milletiae, Bacterium herbicola, CCUG 539, CFBP 3845, CIP 57.51, DSM 3493, Enterobacter agglomerans, Erwinia herbicola, Erwinia milletiae, ICMP 12534, ICPB 3435, NBRC 102470, NCTC 9381, P. agglomerans, Pantoea herbicola, Pseudomonas herbicola
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