STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
acoDBelongs to the aldehyde dehydrogenase family. (506 aa)    
Predicted Functional Partners:
acs
annotation not available
  
 0.933
ackA
Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
 
 
 0.919
adhE_2
annotation not available
  
 0.918
frmA_2
annotation not available
  
 0.917
adhP
annotation not available
  
 0.911
poxB_3
annotation not available
  
 0.910
adhC2
annotation not available
  
 0.910
adhC
annotation not available
  
 0.910
yahK
annotation not available
  
 0.910
poxB_1
annotation not available
  
 0.910
Your Current Organism:
Pantoea agglomerans
NCBI taxonomy Id: 549
Other names: ATCC 27155, Bacillus milletiae, Bacterium herbicola, CCUG 539, CFBP 3845, CIP 57.51, DSM 3493, Enterobacter agglomerans, Erwinia herbicola, Erwinia milletiae, ICMP 12534, ICPB 3435, NBRC 102470, NCTC 9381, P. agglomerans, Pantoea herbicola, Pseudomonas herbicola
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